3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
6VU3|1|D|U|439
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6VU3_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.0913
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6VU3|1|D|C|36
6VU3|1|D|U|37
6VU3|1|D|G|38
6VU3|1|D|G|39
*
6VU3|1|D|C|403
6VU3|1|D|G|404
6VU3|1|D|U|405
6VU3|1|D|G|406
*
6VU3|1|D|C|436
6VU3|1|D|U|437
6VU3|1|D|U|438
6VU3|1|D|U|439
6VU3|1|D|C|440
6VU3|1|D|A|441
6VU3|1|D|G|442
*
6VU3|1|D|C|492
6VU3|1|D|A|493
6VU3|1|D|G|494
6VU3|1|D|A|495
6VU3|1|D|A|496
6VU3|1|D|G|497
6VU3|1|D|A|498
6VU3|1|D|A|499
6VU3|1|D|G|500
*
6VU3|1|D|C|545
6VU3|1|D|A|546
6VU3|1|D|A|547
6VU3|1|D|G|548

Current chains

Chain D
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S4
Chain R
30S ribosomal protein S12

Coloring options:


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