J5_6VU3_002

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6VU3|1|D|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VU3_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VU3|1|D|C|36
6VU3|1|D|U|37
6VU3|1|D|G|38
6VU3|1|D|G|39
*
6VU3|1|D|C|403
6VU3|1|D|G|404
6VU3|1|D|U|405
6VU3|1|D|G|406
*
6VU3|1|D|C|436
6VU3|1|D|U|437
6VU3|1|D|U|438
6VU3|1|D|U|439
6VU3|1|D|C|440
6VU3|1|D|A|441
6VU3|1|D|G|442
*
6VU3|1|D|C|492
6VU3|1|D|A|493
6VU3|1|D|G|494
6VU3|1|D|A|495
6VU3|1|D|A|496
6VU3|1|D|G|497
6VU3|1|D|A|498
6VU3|1|D|A|499
6VU3|1|D|G|500
*
6VU3|1|D|C|545
6VU3|1|D|A|546
6VU3|1|D|A|547
6VU3|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12