J5_6VU3_003

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6VU3|1|D|A|109, 6VU3|1|D|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VU3_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0686

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6VU3|1|D|C|58
6VU3|1|D|A|59
6VU3|1|D|A|60
6VU3|1|D|G|61
*
6VU3|1|D|C|106
6VU3|1|D|G|107
6VU3|1|D|G|108
6VU3|1|D|A|109
6VU3|1|D|C|110
6VU3|1|D|G|111
6VU3|1|D|G|112
6VU3|1|D|G|113
*
6VU3|1|D|C|314
6VU3|1|D|A|315
6VU3|1|D|C|316
*
6VU3|1|D|G|337
6VU3|1|D|A|338
6VU3|1|D|C|339
*
6VU3|1|D|G|350
6VU3|1|D|G|351
6VU3|1|D|C|352
6VU3|1|D|A|353
6VU3|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14