J5_6VU3_004

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6VU3|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VU3_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0381

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6VU3|1|a|C|47
6VU3|1|a|G|48
6VU3|1|a|A|49
6VU3|1|a|U|50
6VU3|1|a|G|51
6VU3|1|a|A|52
6VU3|1|a|A|53
6VU3|1|a|G|54
*
6VU3|1|a|C|116
6VU3|1|a|G|117
6VU3|1|a|A|118
6VU3|1|a|A|119
6VU3|1|a|U|120
6VU3|1|a|G|121
*
6VU3|1|a|C|130
6VU3|1|a|A|131
*
6VU3|1|a|U|148
6VU3|1|a|A|149
6VU3|1|a|U|150
*
6VU3|1|a|A|176
6VU3|1|a|G|177
6VU3|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34