J5_6VWL_002
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VWL|1|1|C|36
6VWL|1|1|U|37
6VWL|1|1|G|38
6VWL|1|1|G|39
*
6VWL|1|1|C|403
6VWL|1|1|G|404
6VWL|1|1|U|405
6VWL|1|1|G|406
*
6VWL|1|1|C|436
6VWL|1|1|U|437
6VWL|1|1|U|438
6VWL|1|1|U|439
6VWL|1|1|C|440
6VWL|1|1|A|441
6VWL|1|1|G|442
*
6VWL|1|1|C|492
6VWL|1|1|A|493
6VWL|1|1|G|494
6VWL|1|1|A|495
6VWL|1|1|A|496
6VWL|1|1|G|497
6VWL|1|1|A|498
6VWL|1|1|A|499
6VWL|1|1|G|500
*
6VWL|1|1|C|545
6VWL|1|1|A|546
6VWL|1|1|A|547
6VWL|1|1|G|548
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S4
- Chain k
- 30S ribosomal protein S12
Coloring options: