3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VWL|1|1|C|36
6VWL|1|1|U|37
6VWL|1|1|G|38
6VWL|1|1|G|39
*
6VWL|1|1|C|403
6VWL|1|1|G|404
6VWL|1|1|U|405
6VWL|1|1|G|406
*
6VWL|1|1|C|436
6VWL|1|1|U|437
6VWL|1|1|U|438
6VWL|1|1|U|439
6VWL|1|1|C|440
6VWL|1|1|A|441
6VWL|1|1|G|442
*
6VWL|1|1|C|492
6VWL|1|1|A|493
6VWL|1|1|G|494
6VWL|1|1|A|495
6VWL|1|1|A|496
6VWL|1|1|G|497
6VWL|1|1|A|498
6VWL|1|1|A|499
6VWL|1|1|G|500
*
6VWL|1|1|C|545
6VWL|1|1|A|546
6VWL|1|1|A|547
6VWL|1|1|G|548

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S4
Chain k
30S ribosomal protein S12

Coloring options:

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