J5_6VWL_003
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6VWL|1|1|A|109, 6VWL|1|1|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6VWL_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1428
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6VWL|1|1|C|58
6VWL|1|1|A|59
6VWL|1|1|A|60
6VWL|1|1|G|61
*
6VWL|1|1|C|106
6VWL|1|1|G|107
6VWL|1|1|G|108
6VWL|1|1|A|109
6VWL|1|1|C|110
6VWL|1|1|G|111
6VWL|1|1|G|112
6VWL|1|1|G|113
*
6VWL|1|1|C|314
6VWL|1|1|A|315
6VWL|1|1|C|316
*
6VWL|1|1|G|337
6VWL|1|1|A|338
6VWL|1|1|C|339
*
6VWL|1|1|G|350
6VWL|1|1|G|351
6VWL|1|1|C|352
6VWL|1|1|A|353
6VWL|1|1|G|354
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L14
- Chain N
- 50S ribosomal protein L19
- Chain o
- 30S ribosomal protein S16
- Chain s
- 30S ribosomal protein S20
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