J5_6VWL_010

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

6VWL|1|2|A|2062, 6VWL|1|2|A|2448, 6VWL|1|2|U|2449, 6VWL|1|2|U|2609, 6VWL|1|2|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWL|1|2|G|2057
6VWL|1|2|A|2058
6VWL|1|2|A|2059
6VWL|1|2|A|2060
6VWL|1|2|G|2061
6VWL|1|2|A|2062
6VWL|1|2|C|2063
6VWL|1|2|C|2064
*
6VWL|1|2|G|2446
6VWL|1|2|G|2447
6VWL|1|2|A|2448
6VWL|1|2|U|2449
6VWL|1|2|A|2450
6VWL|1|2|A|2451
6VWL|1|2|C|2452
6VWL|1|2|A|2453
*
6VWL|1|2|U|2500
6VWL|1|2|C|2501
6VWL|1|2|G|2502
6VWL|1|2|A|2503
6VWL|1|2|U|2504
6VWL|1|2|G|2505
6VWL|1|2|U|2506
*
6VWL|1|2|G|2583
6VWL|1|2|U|2584
6VWL|1|2|U|2585
6VWL|1|2|U|2586
6VWL|1|2|A|2587
6VWL|1|2|G|2588
*
6VWL|1|2|C|2606
6VWL|1|2|G|2607
6VWL|1|2|G|2608
6VWL|1|2|U|2609
6VWL|1|2|C|2610
6VWL|1|2|C|2611

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15

Chain K

50S ribosomal protein L16

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32