J5_6VWM_001

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGG*CGUG*CUUU*AAG*CAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWM|1|1|C|36
6VWM|1|1|U|37
6VWM|1|1|G|38
6VWM|1|1|G|39
*
6VWM|1|1|C|403
6VWM|1|1|G|404
6VWM|1|1|U|405
6VWM|1|1|G|406
*
6VWM|1|1|C|436
6VWM|1|1|U|437
6VWM|1|1|U|438
6VWM|1|1|U|439
*
6VWM|1|1|A|498
6VWM|1|1|A|499
6VWM|1|1|G|500
*
6VWM|1|1|C|545
6VWM|1|1|A|546
6VWM|1|1|A|547
6VWM|1|1|G|548

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S4

Chain k

30S ribosomal protein S12