J5_6VWM_005
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6VWM|1|2|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6VWM_005 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1046
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6VWM|1|2|C|584
6VWM|1|2|G|585
6VWM|1|2|A|586
6VWM|1|2|C|587
6VWM|1|2|U|588
6VWM|1|2|U|589
*
6VWM|1|2|A|668
6VWM|1|2|G|669
6VWM|1|2|A|670
6VWM|1|2|C|671
*
6VWM|1|2|G|809
6VWM|1|2|U|810
6VWM|1|2|U|811
6VWM|1|2|C|812
*
6VWM|1|2|G|1195
6VWM|1|2|C|1196
*
6VWM|1|2|G|1250
6VWM|1|2|C|1251
6VWM|1|2|G|1252
6VWM|1|2|A|1253
6VWM|1|2|A|1254
6VWM|1|2|U|1255
6VWM|1|2|G|1256
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain AB
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
- Chain O
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L21
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