J5_6VWM_007

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC

Length

40 nucleotides

Bulged bases

6VWM|1|2|A|2062, 6VWM|1|2|A|2448, 6VWM|1|2|U|2449, 6VWM|1|2|U|2506, 6VWM|1|2|U|2585, 6VWM|1|2|U|2609, 6VWM|1|2|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWM|1|2|G|2057
6VWM|1|2|A|2058
6VWM|1|2|A|2059
6VWM|1|2|A|2060
6VWM|1|2|G|2061
6VWM|1|2|A|2062
6VWM|1|2|C|2063
6VWM|1|2|C|2064
*
6VWM|1|2|G|2446
6VWM|1|2|G|2447
6VWM|1|2|A|2448
6VWM|1|2|U|2449
6VWM|1|2|A|2450
6VWM|1|2|A|2451
6VWM|1|2|C|2452
6VWM|1|2|A|2453
6VWM|1|2|G|2454
*
6VWM|1|2|C|2498
6VWM|1|2|C|2499
6VWM|1|2|U|2500
6VWM|1|2|C|2501
6VWM|1|2|G|2502
6VWM|1|2|A|2503
6VWM|1|2|U|2504
6VWM|1|2|G|2505
6VWM|1|2|U|2506
6VWM|1|2|C|2507
*
6VWM|1|2|G|2582
6VWM|1|2|G|2583
6VWM|1|2|U|2584
6VWM|1|2|U|2585
6VWM|1|2|U|2586
6VWM|1|2|A|2587
6VWM|1|2|G|2588
*
6VWM|1|2|C|2606
6VWM|1|2|G|2607
6VWM|1|2|G|2608
6VWM|1|2|U|2609
6VWM|1|2|C|2610
6VWM|1|2|C|2611

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15

Chain K

50S ribosomal protein L16

Chain Q

50S ribosomal protein L22

Chain Y

50S ribosomal protein L32