J5_6VYQ_003

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6VYQ|1|D|A|109, 6VYQ|1|D|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYQ_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0686

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6VYQ|1|D|C|58
6VYQ|1|D|A|59
6VYQ|1|D|A|60
6VYQ|1|D|G|61
*
6VYQ|1|D|C|106
6VYQ|1|D|G|107
6VYQ|1|D|G|108
6VYQ|1|D|A|109
6VYQ|1|D|C|110
6VYQ|1|D|G|111
6VYQ|1|D|G|112
6VYQ|1|D|G|113
*
6VYQ|1|D|C|314
6VYQ|1|D|A|315
6VYQ|1|D|C|316
*
6VYQ|1|D|G|337
6VYQ|1|D|A|338
6VYQ|1|D|C|339
*
6VYQ|1|D|G|350
6VYQ|1|D|G|351
6VYQ|1|D|C|352
6VYQ|1|D|A|353
6VYQ|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14