J5_6VYR_002

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6VYR|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYR_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VYR|1|D|C|36
6VYR|1|D|U|37
6VYR|1|D|G|38
6VYR|1|D|G|39
*
6VYR|1|D|C|403
6VYR|1|D|G|404
6VYR|1|D|U|405
6VYR|1|D|G|406
*
6VYR|1|D|C|436
6VYR|1|D|U|437
6VYR|1|D|U|438
6VYR|1|D|U|439
6VYR|1|D|C|440
6VYR|1|D|A|441
6VYR|1|D|G|442
*
6VYR|1|D|C|492
6VYR|1|D|A|493
6VYR|1|D|G|494
6VYR|1|D|A|495
6VYR|1|D|A|496
6VYR|1|D|G|497
6VYR|1|D|A|498
6VYR|1|D|A|499
6VYR|1|D|G|500
*
6VYR|1|D|C|545
6VYR|1|D|A|546
6VYR|1|D|A|547
6VYR|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12