J5_6VYR_003

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6VYR|1|D|A|109, 6VYR|1|D|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYR_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0686

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6VYR|1|D|C|58
6VYR|1|D|A|59
6VYR|1|D|A|60
6VYR|1|D|G|61
*
6VYR|1|D|C|106
6VYR|1|D|G|107
6VYR|1|D|G|108
6VYR|1|D|A|109
6VYR|1|D|C|110
6VYR|1|D|G|111
6VYR|1|D|G|112
6VYR|1|D|G|113
*
6VYR|1|D|C|314
6VYR|1|D|A|315
6VYR|1|D|C|316
*
6VYR|1|D|G|337
6VYR|1|D|A|338
6VYR|1|D|C|339
*
6VYR|1|D|G|350
6VYR|1|D|G|351
6VYR|1|D|C|352
6VYR|1|D|A|353
6VYR|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14