J5_6VYS_001

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

6VYS|1|D|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYS_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1101

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VYS|1|D|C|36
6VYS|1|D|U|37
6VYS|1|D|G|38
6VYS|1|D|G|39
*
6VYS|1|D|C|403
6VYS|1|D|G|404
6VYS|1|D|U|405
6VYS|1|D|G|406
*
6VYS|1|D|C|436
6VYS|1|D|U|437
6VYS|1|D|U|438
6VYS|1|D|U|439
6VYS|1|D|C|440
*
6VYS|1|D|G|497
6VYS|1|D|A|498
6VYS|1|D|A|499
6VYS|1|D|G|500
*
6VYS|1|D|C|545
6VYS|1|D|A|546
6VYS|1|D|A|547
6VYS|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12