J5_6VYS_004

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6VYS|1|a|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYS_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0381

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6VYS|1|a|C|47
6VYS|1|a|G|48
6VYS|1|a|A|49
6VYS|1|a|U|50
6VYS|1|a|G|51
6VYS|1|a|A|52
6VYS|1|a|A|53
6VYS|1|a|G|54
*
6VYS|1|a|C|116
6VYS|1|a|G|117
6VYS|1|a|A|118
6VYS|1|a|A|119
6VYS|1|a|U|120
6VYS|1|a|G|121
*
6VYS|1|a|C|130
6VYS|1|a|A|131
*
6VYS|1|a|U|148
6VYS|1|a|A|149
6VYS|1|a|U|150
*
6VYS|1|a|A|176
6VYS|1|a|G|177
6VYS|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34