J5_6VZ2_002

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6VZ2|1|D|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VZ2_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VZ2|1|D|C|36
6VZ2|1|D|U|37
6VZ2|1|D|G|38
6VZ2|1|D|G|39
*
6VZ2|1|D|C|403
6VZ2|1|D|G|404
6VZ2|1|D|U|405
6VZ2|1|D|G|406
*
6VZ2|1|D|C|436
6VZ2|1|D|U|437
6VZ2|1|D|U|438
6VZ2|1|D|U|439
6VZ2|1|D|C|440
6VZ2|1|D|A|441
6VZ2|1|D|G|442
*
6VZ2|1|D|C|492
6VZ2|1|D|A|493
6VZ2|1|D|G|494
6VZ2|1|D|A|495
6VZ2|1|D|A|496
6VZ2|1|D|G|497
6VZ2|1|D|A|498
6VZ2|1|D|A|499
6VZ2|1|D|G|500
*
6VZ2|1|D|C|545
6VZ2|1|D|A|546
6VZ2|1|D|A|547
6VZ2|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12