J5_6VZJ_002

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6VZJ|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VZJ_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VZJ|1|D|C|36
6VZJ|1|D|U|37
6VZJ|1|D|G|38
6VZJ|1|D|G|39
*
6VZJ|1|D|C|403
6VZJ|1|D|G|404
6VZJ|1|D|U|405
6VZJ|1|D|G|406
*
6VZJ|1|D|C|436
6VZJ|1|D|U|437
6VZJ|1|D|U|438
6VZJ|1|D|U|439
6VZJ|1|D|C|440
6VZJ|1|D|A|441
6VZJ|1|D|G|442
*
6VZJ|1|D|C|492
6VZJ|1|D|A|493
6VZJ|1|D|G|494
6VZJ|1|D|A|495
6VZJ|1|D|A|496
6VZJ|1|D|G|497
6VZJ|1|D|A|498
6VZJ|1|D|A|499
6VZJ|1|D|G|500
*
6VZJ|1|D|C|545
6VZJ|1|D|A|546
6VZJ|1|D|A|547
6VZJ|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12