J5_6VZJ_004

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6VZJ|1|a|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VZJ_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0381

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6VZJ|1|a|C|47
6VZJ|1|a|G|48
6VZJ|1|a|A|49
6VZJ|1|a|U|50
6VZJ|1|a|G|51
6VZJ|1|a|A|52
6VZJ|1|a|A|53
6VZJ|1|a|G|54
*
6VZJ|1|a|C|116
6VZJ|1|a|G|117
6VZJ|1|a|A|118
6VZJ|1|a|A|119
6VZJ|1|a|U|120
6VZJ|1|a|G|121
*
6VZJ|1|a|C|130
6VZJ|1|a|A|131
*
6VZJ|1|a|U|148
6VZJ|1|a|A|149
6VZJ|1|a|U|150
*
6VZJ|1|a|A|176
6VZJ|1|a|G|177
6VZJ|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34