J5_6W2S_006

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUCGCUCGACUU*AUGCCGACGGG*UG*CCGAU*ACGACC

Length

36 nucleotides

Bulged bases

6W2S|1|A|C|127, 6W2S|1|A|C|142, 6W2S|1|A|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2S|1|A|G|123
6W2S|1|A|U|124
6W2S|1|A|C|125
6W2S|1|A|G|126
6W2S|1|A|C|127
6W2S|1|A|U|128
6W2S|1|A|C|129
6W2S|1|A|G|130
6W2S|1|A|A|141
6W2S|1|A|C|142
6W2S|1|A|U|143
6W2S|1|A|U|144
*
6W2S|1|A|A|175
6W2S|1|A|U|176
6W2S|1|A|G|177
6W2S|1|A|C|178
6W2S|1|A|C|179
6W2S|1|A|G|180
6W2S|1|A|A|181
6W2S|1|A|C|182
6W2S|1|A|G|183
6W2S|1|A|G|184
6W2S|1|A|G|185
*
6W2S|1|A|U|214
6W2S|1|A|G|215
*
6W2S|1|A|C|310
6W2S|1|A|C|311
6W2S|1|A|G|312
6W2S|1|A|A|313
6W2S|1|A|U|314
*
6W2S|1|A|A|336
6W2S|1|A|C|337
6W2S|1|A|G|338
6W2S|1|A|A|339
6W2S|1|A|C|340
6W2S|1|A|C|341

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain J

eS8