J5_6W2S_009
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6W2S|1|A|C|30
6W2S|1|A|U|31
6W2S|1|A|U|32
6W2S|1|A|G|33
6W2S|1|A|U|34
*
6W2S|1|A|A|521
6W2S|1|A|A|522
6W2S|1|A|A|523
6W2S|1|A|U|524
6W2S|1|A|A|525
6W2S|1|A|A|526
6W2S|1|A|C|527
*
6W2S|1|A|G|558
6W2S|1|A|G|559
6W2S|1|A|A|560
6W2S|1|A|A|561
6W2S|1|A|U|562
6W2S|1|A|G|563
6W2S|1|A|A|564
6W2S|1|A|G|565
*
6W2S|1|A|C|585
6W2S|1|A|G|586
6W2S|1|A|A|587
6W2S|1|A|G|588
6W2S|1|A|G|589
6W2S|1|A|A|590
6W2S|1|A|U|591
6W2S|1|A|C|592
6W2S|1|A|C|593
6W2S|1|A|A|594
6W2S|1|A|U|595
*
6W2S|1|A|A|641
6W2S|1|A|U|642
6W2S|1|A|A|643
6W2S|1|A|G|644
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain K
- uS4
- Chain Y
- uS12
- Chain f
- eS30
Coloring options: