3D structure

PDB id
6WDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AGG
Length
22 nucleotides
Bulged bases
6WDA|1|1|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6WDA_001 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.1149
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6WDA|1|1|C|47
6WDA|1|1|G|48
6WDA|1|1|A|49
6WDA|1|1|U|50
6WDA|1|1|G|51
6WDA|1|1|A|52
6WDA|1|1|A|53
6WDA|1|1|G|54
*
6WDA|1|1|C|116
6WDA|1|1|G|117
6WDA|1|1|A|118
6WDA|1|1|A|119
6WDA|1|1|U|120
6WDA|1|1|G|121
*
6WDA|1|1|C|130
6WDA|1|1|A|131
*
6WDA|1|1|U|148
6WDA|1|1|A|149
6WDA|1|1|U|150
*
6WDA|1|1|A|176
6WDA|1|1|G|177
6WDA|1|1|G|178

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3786 s