3D structure

PDB id
6WDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
6WDA|1|1|A|2062, 6WDA|1|1|A|2448, 6WDA|1|1|U|2609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WDA|1|1|G|2057
6WDA|1|1|A|2058
6WDA|1|1|A|2059
6WDA|1|1|A|2060
6WDA|1|1|G|2061
6WDA|1|1|A|2062
6WDA|1|1|C|2063
6WDA|1|1|C|2064
*
6WDA|1|1|G|2446
6WDA|1|1|G|2447
6WDA|1|1|A|2448
6WDA|1|1|U|2449
6WDA|1|1|A|2450
6WDA|1|1|A|2451
6WDA|1|1|C|2452
6WDA|1|1|A|2453
*
6WDA|1|1|U|2500
6WDA|1|1|C|2501
6WDA|1|1|G|2502
6WDA|1|1|A|2503
6WDA|1|1|U|2504
6WDA|1|1|G|2505
6WDA|1|1|U|2506
6WDA|1|1|C|2507
*
6WDA|1|1|G|2582
6WDA|1|1|G|2583
6WDA|1|1|U|2584
6WDA|1|1|U|2585
6WDA|1|1|U|2586
6WDA|1|1|A|2587
6WDA|1|1|G|2588
*
6WDA|1|1|C|2606
6WDA|1|1|G|2607
6WDA|1|1|G|2608
6WDA|1|1|U|2609
6WDA|1|1|C|2610
6WDA|1|1|C|2611

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain B
50S ribosomal protein L32
Chain b
50S ribosomal protein L2
Chain c
50S ribosomal protein L3
Chain d
50S ribosomal protein L4
Chain l
50S ribosomal protein L15
Chain m
50S ribosomal protein L16
Chain s
50S ribosomal protein L22

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2113 s
Application loaded.