J5_6WDE_001

3D structure

PDB id

6WDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6WDE|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6WDE_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1075

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6WDE|1|1|C|47
6WDE|1|1|G|48
6WDE|1|1|A|49
6WDE|1|1|U|50
6WDE|1|1|G|51
6WDE|1|1|A|52
6WDE|1|1|A|53
6WDE|1|1|G|54
*
6WDE|1|1|C|116
6WDE|1|1|G|117
6WDE|1|1|A|118
6WDE|1|1|A|119
6WDE|1|1|U|120
6WDE|1|1|G|121
*
6WDE|1|1|C|130
6WDE|1|1|A|131
*
6WDE|1|1|U|148
6WDE|1|1|A|149
6WDE|1|1|U|150
*
6WDE|1|1|A|176
6WDE|1|1|G|177
6WDE|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34