J5_6WDJ_005
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 6WDJ|1|1|A|2062, 6WDJ|1|1|A|2448, 6WDJ|1|1|U|2449, 6WDJ|1|1|U|2609, 6WDJ|1|1|C|2610
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WDJ|1|1|G|2057
6WDJ|1|1|A|2058
6WDJ|1|1|A|2059
6WDJ|1|1|A|2060
6WDJ|1|1|G|2061
6WDJ|1|1|A|2062
6WDJ|1|1|C|2063
6WDJ|1|1|C|2064
*
6WDJ|1|1|G|2446
6WDJ|1|1|G|2447
6WDJ|1|1|A|2448
6WDJ|1|1|U|2449
6WDJ|1|1|A|2450
6WDJ|1|1|A|2451
6WDJ|1|1|C|2452
6WDJ|1|1|A|2453
*
6WDJ|1|1|U|2500
6WDJ|1|1|C|2501
6WDJ|1|1|G|2502
6WDJ|1|1|A|2503
6WDJ|1|1|U|2504
6WDJ|1|1|G|2505
6WDJ|1|1|U|2506
6WDJ|1|1|C|2507
*
6WDJ|1|1|G|2582
6WDJ|1|1|G|2583
6WDJ|1|1|U|2584
6WDJ|1|1|U|2585
6WDJ|1|1|U|2586
6WDJ|1|1|A|2587
6WDJ|1|1|G|2588
*
6WDJ|1|1|C|2606
6WDJ|1|1|G|2607
6WDJ|1|1|G|2608
6WDJ|1|1|U|2609
6WDJ|1|1|C|2610
6WDJ|1|1|C|2611
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain 7
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L32
- Chain b
- 50S ribosomal protein L2
- Chain c
- 50S ribosomal protein L3
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain m
- 50S ribosomal protein L16
- Chain s
- 50S ribosomal protein L22
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