3D structure

PDB id
6WDM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6WDM_008 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.1127
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6WDM|1|3|C|36
6WDM|1|3|U|37
6WDM|1|3|G|38
6WDM|1|3|G|39
*
6WDM|1|3|C|403
6WDM|1|3|G|404
6WDM|1|3|U|405
6WDM|1|3|G|406
*
6WDM|1|3|C|436
6WDM|1|3|U|437
6WDM|1|3|U|438
6WDM|1|3|U|439
6WDM|1|3|C|440
6WDM|1|3|A|441
6WDM|1|3|G|442
*
6WDM|1|3|C|492
6WDM|1|3|A|493
6WDM|1|3|G|494
6WDM|1|3|A|495
6WDM|1|3|A|496
6WDM|1|3|G|497
6WDM|1|3|A|498
6WDM|1|3|A|499
6WDM|1|3|G|500
*
6WDM|1|3|C|545
6WDM|1|3|A|546
6WDM|1|3|A|547
6WDM|1|3|G|548

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S4
Chain Q
30S ribosomal protein S12

Coloring options:


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