J5_6WDR_003

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGGUAUAAC*GCUAAUACAUGCUUAAAA*UG*CGA*UGGUU

Length

54 nucleotides

Bulged bases

6WDR|1|2|U|128, 6WDR|1|2|C|130, 6WDR|1|2|U|134, 6WDR|1|2|A|140, 6WDR|1|2|U|141, 6WDR|1|2|U|433, 6WDR|1|2|U|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|A|124
6WDR|1|2|U|125
6WDR|1|2|A|126
6WDR|1|2|G|127
6WDR|1|2|U|128
6WDR|1|2|U|129
6WDR|1|2|C|130
6WDR|1|2|C|131
6WDR|1|2|U|132
6WDR|1|2|U|133
6WDR|1|2|U|134
6WDR|1|2|A|135
6WDR|1|2|C|136
6WDR|1|2|U|137
6WDR|1|2|A|138
6WDR|1|2|C|139
6WDR|1|2|A|140
6WDR|1|2|U|141
6WDR|1|2|G|142
6WDR|1|2|G|143
6WDR|1|2|U|144
6WDR|1|2|A|145
6WDR|1|2|U|146
6WDR|1|2|A|147
6WDR|1|2|A|148
6WDR|1|2|C|149
*
6WDR|1|2|G|428
6WDR|1|2|C|429
6WDR|1|2|U|430
6WDR|1|2|A|431
6WDR|1|2|A|432
6WDR|1|2|U|433
6WDR|1|2|A|434
6WDR|1|2|C|435
6WDR|1|2|A|436
6WDR|1|2|U|437
6WDR|1|2|G|438
6WDR|1|2|C|439
6WDR|1|2|U|440
6WDR|1|2|U|441
6WDR|1|2|A|442
6WDR|1|2|A|443
6WDR|1|2|A|444
6WDR|1|2|A|445
*
6WDR|1|2|U|466
6WDR|1|2|G|467
*
6WDR|1|2|C|526
6WDR|1|2|G|527
6WDR|1|2|A|528
*
6WDR|1|2|U|552
6WDR|1|2|G|553
6WDR|1|2|G|554
6WDR|1|2|U|555
6WDR|1|2|U|556

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A

Chain Y

40S ribosomal protein S24-A