J5_6WDR_005

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUUUG*UUUCCUUC*GGACUUUUAC*GAAUAAUAGAAUAGGA*UAAUGAU

Length

47 nucleotides

Bulged bases

6WDR|1|2|U|901, 6WDR|1|2|U|902, 6WDR|1|2|U|940, 6WDR|1|2|C|942, 6WDR|1|2|U|1059, 6WDR|1|2|G|1061, 6WDR|1|2|A|1102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|A|899
6WDR|1|2|C|900
6WDR|1|2|U|901
6WDR|1|2|U|902
6WDR|1|2|U|903
6WDR|1|2|G|904
*
6WDR|1|2|U|939
6WDR|1|2|U|940
6WDR|1|2|U|941
6WDR|1|2|C|942
6WDR|1|2|C|943
6WDR|1|2|U|944
6WDR|1|2|U|945
6WDR|1|2|C|946
*
6WDR|1|2|G|984
6WDR|1|2|G|985
6WDR|1|2|A|986
6WDR|1|2|C|987
6WDR|1|2|U|988
6WDR|1|2|U|989
6WDR|1|2|U|990
6WDR|1|2|U|991
6WDR|1|2|A|992
6WDR|1|2|C|993
*
6WDR|1|2|G|1048
6WDR|1|2|A|1049
6WDR|1|2|A|1050
6WDR|1|2|U|1051
6WDR|1|2|A|1052
6WDR|1|2|A|1053
6WDR|1|2|U|1054
6WDR|1|2|A|1055
6WDR|1|2|G|1056
6WDR|1|2|A|1057
6WDR|1|2|A|1058
6WDR|1|2|U|1059
6WDR|1|2|A|1060
6WDR|1|2|G|1061
6WDR|1|2|G|1062
6WDR|1|2|A|1063
*
6WDR|1|2|U|1100
6WDR|1|2|A|1101
6WDR|1|2|A|1102
6WDR|1|2|U|1103
6WDR|1|2|G|1104
6WDR|1|2|A|1105
6WDR|1|2|U|1106

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain H

40S ribosomal protein S7-A

Chain L

40S ribosomal protein S11-A

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S22-A

Chain X

40S ribosomal protein S23-A