J5_6WDR_006

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCUUGU*AAAUAAC*GAAUGAG*CGAGGAACAAU*AUAGCG

Length

38 nucleotides

Bulged bases

6WDR|1|2|U|33, 6WDR|1|2|A|804, 6WDR|1|2|G|858, 6WDR|1|2|C|859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|U|29
6WDR|1|2|G|30
6WDR|1|2|C|31
6WDR|1|2|U|32
6WDR|1|2|U|33
6WDR|1|2|G|34
6WDR|1|2|U|35
*
6WDR|1|2|A|736
6WDR|1|2|A|737
6WDR|1|2|A|738
6WDR|1|2|U|739
6WDR|1|2|A|740
6WDR|1|2|A|741
6WDR|1|2|C|742
*
6WDR|1|2|G|773
6WDR|1|2|A|774
6WDR|1|2|A|775
6WDR|1|2|U|776
6WDR|1|2|G|777
6WDR|1|2|A|778
6WDR|1|2|G|779
*
6WDR|1|2|C|799
6WDR|1|2|G|800
6WDR|1|2|A|801
6WDR|1|2|G|802
6WDR|1|2|G|803
6WDR|1|2|A|804
6WDR|1|2|A|805
6WDR|1|2|C|806
6WDR|1|2|A|807
6WDR|1|2|A|808
6WDR|1|2|U|809
*
6WDR|1|2|A|855
6WDR|1|2|U|856
6WDR|1|2|A|857
6WDR|1|2|G|858
6WDR|1|2|C|859
6WDR|1|2|G|860

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A