J5_6WNV_004

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6WNV|1|4|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6WNV_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0968

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6WNV|1|4|C|47
6WNV|1|4|G|48
6WNV|1|4|A|49
6WNV|1|4|U|50
6WNV|1|4|G|51
6WNV|1|4|A|52
6WNV|1|4|A|53
6WNV|1|4|G|54
*
6WNV|1|4|C|116
6WNV|1|4|G|117
6WNV|1|4|A|118
6WNV|1|4|A|119
6WNV|1|4|U|120
6WNV|1|4|G|121
*
6WNV|1|4|C|130
6WNV|1|4|A|131
*
6WNV|1|4|U|148
6WNV|1|4|A|149
6WNV|1|4|U|150
*
6WNV|1|4|A|176
6WNV|1|4|G|177
6WNV|1|4|G|178

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34