J5_6WNW_004

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6WNW|1|4|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6WNW_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0878

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6WNW|1|4|C|47
6WNW|1|4|G|48
6WNW|1|4|A|49
6WNW|1|4|U|50
6WNW|1|4|G|51
6WNW|1|4|A|52
6WNW|1|4|A|53
6WNW|1|4|G|54
*
6WNW|1|4|C|116
6WNW|1|4|G|117
6WNW|1|4|A|118
6WNW|1|4|A|119
6WNW|1|4|U|120
6WNW|1|4|G|121
*
6WNW|1|4|C|130
6WNW|1|4|A|131
*
6WNW|1|4|U|148
6WNW|1|4|A|149
6WNW|1|4|U|150
*
6WNW|1|4|A|176
6WNW|1|4|G|177
6WNW|1|4|G|178

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34