J5_6WQN_005

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCC

Length

35 nucleotides

Bulged bases

6WQN|1|1|A|2089, 6WQN|1|1|A|2475, 6WQN|1|1|U|2476, 6WQN|1|1|U|2612, 6WQN|1|1|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WQN|1|1|G|2084
6WQN|1|1|A|2085
6WQN|1|1|A|2086
6WQN|1|1|A|2087
6WQN|1|1|G|2088
6WQN|1|1|A|2089
6WQN|1|1|C|2090
6WQN|1|1|C|2091
*
6WQN|1|1|G|2473
6WQN|1|1|G|2474
6WQN|1|1|A|2475
6WQN|1|1|U|2476
6WQN|1|1|A|2477
6WQN|1|1|A|2478
6WQN|1|1|C|2479
6WQN|1|1|A|2480
*
6WQN|1|1|U|2527
6WQN|1|1|C|2528
6WQN|1|1|G|2529
6WQN|1|1|A|2530
6WQN|1|1|U|2531
6WQN|1|1|G|2532
6WQN|1|1|U|2533
*
6WQN|1|1|G|2610
6WQN|1|1|U|2611
6WQN|1|1|U|2612
6WQN|1|1|C|2613
6WQN|1|1|A|2614
6WQN|1|1|G|2615
*
6WQN|1|1|C|2633
6WQN|1|1|G|2634
6WQN|1|1|G|2635
6WQN|1|1|U|2636
6WQN|1|1|C|2637
6WQN|1|1|C|2638

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain L

50S ribosomal protein L3

Chain N

50S ribosomal protein L32

Chain S

50S ribosomal protein L4

Chain X

50S ribosomal protein L15

Chain Y

50S ribosomal protein L16