J5_6X6T_001

3D structure

PDB id

6X6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

6X6T|1|D|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6X6T_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1101

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6X6T|1|D|C|36
6X6T|1|D|U|37
6X6T|1|D|G|38
6X6T|1|D|G|39
*
6X6T|1|D|C|403
6X6T|1|D|G|404
6X6T|1|D|U|405
6X6T|1|D|G|406
*
6X6T|1|D|C|436
6X6T|1|D|U|437
6X6T|1|D|U|438
6X6T|1|D|U|439
6X6T|1|D|C|440
*
6X6T|1|D|G|497
6X6T|1|D|A|498
6X6T|1|D|A|499
6X6T|1|D|G|500
*
6X6T|1|D|C|545
6X6T|1|D|A|546
6X6T|1|D|A|547
6X6T|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12