J5_6XDQ_002
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- 6XDQ|1|D|U|439
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XDQ_002 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0913
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6XDQ|1|D|C|36
6XDQ|1|D|U|37
6XDQ|1|D|G|38
6XDQ|1|D|G|39
*
6XDQ|1|D|C|403
6XDQ|1|D|G|404
6XDQ|1|D|U|405
6XDQ|1|D|G|406
*
6XDQ|1|D|C|436
6XDQ|1|D|U|437
6XDQ|1|D|U|438
6XDQ|1|D|U|439
6XDQ|1|D|C|440
6XDQ|1|D|A|441
6XDQ|1|D|G|442
*
6XDQ|1|D|C|492
6XDQ|1|D|A|493
6XDQ|1|D|G|494
6XDQ|1|D|A|495
6XDQ|1|D|A|496
6XDQ|1|D|G|497
6XDQ|1|D|A|498
6XDQ|1|D|A|499
6XDQ|1|D|G|500
*
6XDQ|1|D|C|545
6XDQ|1|D|A|546
6XDQ|1|D|A|547
6XDQ|1|D|G|548
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S4
- Chain R
- 30S ribosomal protein S12
Coloring options: