J5_6XDR_003

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6XDR|1|D|A|109, 6XDR|1|D|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XDR_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0686

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6XDR|1|D|C|58
6XDR|1|D|A|59
6XDR|1|D|A|60
6XDR|1|D|G|61
*
6XDR|1|D|C|106
6XDR|1|D|G|107
6XDR|1|D|G|108
6XDR|1|D|A|109
6XDR|1|D|C|110
6XDR|1|D|G|111
6XDR|1|D|G|112
6XDR|1|D|G|113
*
6XDR|1|D|C|314
6XDR|1|D|A|315
6XDR|1|D|C|316
*
6XDR|1|D|G|337
6XDR|1|D|A|338
6XDR|1|D|C|339
*
6XDR|1|D|G|350
6XDR|1|D|G|351
6XDR|1|D|C|352
6XDR|1|D|A|353
6XDR|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14