3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AGG
Length
22 nucleotides
Bulged bases
6XDR|1|a|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6XDR_004 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.0381
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6XDR|1|a|C|47
6XDR|1|a|G|48
6XDR|1|a|A|49
6XDR|1|a|U|50
6XDR|1|a|G|51
6XDR|1|a|A|52
6XDR|1|a|A|53
6XDR|1|a|G|54
*
6XDR|1|a|C|116
6XDR|1|a|G|117
6XDR|1|a|A|118
6XDR|1|a|A|119
6XDR|1|a|U|120
6XDR|1|a|G|121
*
6XDR|1|a|C|130
6XDR|1|a|A|131
*
6XDR|1|a|U|148
6XDR|1|a|A|149
6XDR|1|a|U|150
*
6XDR|1|a|A|176
6XDR|1|a|G|177
6XDR|1|a|G|178

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
50S ribosomal protein L34

Coloring options:


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