J5_6XGF_002

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6XGF|1|D|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XGF_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6XGF|1|D|C|36
6XGF|1|D|U|37
6XGF|1|D|G|38
6XGF|1|D|G|39
*
6XGF|1|D|C|403
6XGF|1|D|G|404
6XGF|1|D|U|405
6XGF|1|D|G|406
*
6XGF|1|D|C|436
6XGF|1|D|U|437
6XGF|1|D|U|438
6XGF|1|D|U|439
6XGF|1|D|C|440
6XGF|1|D|A|441
6XGF|1|D|G|442
*
6XGF|1|D|C|492
6XGF|1|D|A|493
6XGF|1|D|G|494
6XGF|1|D|A|495
6XGF|1|D|A|496
6XGF|1|D|G|497
6XGF|1|D|A|498
6XGF|1|D|A|499
6XGF|1|D|G|500
*
6XGF|1|D|C|545
6XGF|1|D|A|546
6XGF|1|D|A|547
6XGF|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12