J5_6XHV_013

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAGC*GCAAAG

Length

26 nucleotides

Bulged bases

6XHV|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHV|1|2A|C|601
6XHV|1|2A|G|602
6XHV|1|2A|A|603
6XHV|1|2A|G|604
*
6XHV|1|2A|C|624
6XHV|1|2A|G|625
6XHV|1|2A|U|626
6XHV|1|2A|A|627
6XHV|1|2A|G|628
*
6XHV|1|2A|C|635
6XHV|1|2A|G|636
6XHV|1|2A|A|637
6XHV|1|2A|G|638
*
6XHV|1|2A|C|650
6XHV|1|2A|G|651
6XHV|1|2A|C|652
6XHV|1|2A|A|652|||A
6XHV|1|2A|A|652|||B
6XHV|1|2A|G|652|||C
6XHV|1|2A|C|652|||D
*
6XHV|1|2A|G|652|||U
6XHV|1|2A|C|652|||V
6XHV|1|2A|A|653
6XHV|1|2A|A|654
6XHV|1|2A|A|655
6XHV|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15