3D structure

PDB id
6XHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length
37 nucleotides
Bulged bases
6XHX|1|1A|A|2448, 6XHX|1|1A|U|2449, 6XHX|1|1A|U|2585, 6XHX|1|1A|U|2609
QA status
Modified nucleotides: 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XHX|1|1A|A|2057
6XHX|1|1A|A|2058
6XHX|1|1A|A|2059
6XHX|1|1A|A|2060
6XHX|1|1A|G|2061
6XHX|1|1A|A|2062
6XHX|1|1A|C|2063
6XHX|1|1A|C|2064
*
6XHX|1|1A|G|2446
6XHX|1|1A|G|2447
6XHX|1|1A|A|2448
6XHX|1|1A|U|2449
6XHX|1|1A|A|2450
6XHX|1|1A|A|2451
6XHX|1|1A|C|2452
6XHX|1|1A|A|2453
*
6XHX|1|1A|U|2500
6XHX|1|1A|C|2501
6XHX|1|1A|G|2502
6XHX|1|1A|2MA|2503
6XHX|1|1A|U|2504
6XHX|1|1A|G|2505
6XHX|1|1A|U|2506
6XHX|1|1A|C|2507
*
6XHX|1|1A|G|2582
6XHX|1|1A|G|2583
6XHX|1|1A|U|2584
6XHX|1|1A|U|2585
6XHX|1|1A|C|2586
6XHX|1|1A|A|2587
6XHX|1|1A|G|2588
*
6XHX|1|1A|C|2606
6XHX|1|1A|G|2607
6XHX|1|1A|G|2608
6XHX|1|1A|U|2609
6XHX|1|1A|C|2610
6XHX|1|1A|U|2611

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1D
50S ribosomal protein L2
Chain 1E
50S ribosomal protein L3
Chain 1F
50S ribosomal protein L4
Chain 1P
50S ribosomal protein L15
Chain 1Q
50S ribosomal protein L16
Chain 1W
50S ribosomal protein L22

Coloring options:

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