J5_6XHY_015

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

6XHY|1|2A|G|1758, 6XHY|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XHY_015 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0603

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6XHY|1|2A|G|1674
6XHY|1|2A|C|1675
6XHY|1|2A|A|1676
6XHY|1|2A|A|1677
6XHY|1|2A|G|1678
6XHY|1|2A|U|1679
6XHY|1|2A|U|1680
6XHY|1|2A|G|1681
6XHY|1|2A|G|1682
*
6XHY|1|2A|U|1706
6XHY|1|2A|G|1707
*
6XHY|1|2A|C|1751
6XHY|1|2A|C|1752
*
6XHY|1|2A|G|1756
6XHY|1|2A|U|1757
6XHY|1|2A|G|1758
6XHY|1|2A|A|1759
6XHY|1|2A|A|1760
6XHY|1|2A|C|1761
6XHY|1|2A|A|1762
6XHY|1|2A|G|1763
6XHY|1|2A|G|1764
*
6XHY|1|2A|C|1988
6XHY|1|2A|G|1989
6XHY|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA