J5_6XIJ_002

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6XIJ|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XIJ_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6XIJ|1|D|C|36
6XIJ|1|D|U|37
6XIJ|1|D|G|38
6XIJ|1|D|G|39
*
6XIJ|1|D|C|403
6XIJ|1|D|G|404
6XIJ|1|D|U|405
6XIJ|1|D|G|406
*
6XIJ|1|D|C|436
6XIJ|1|D|U|437
6XIJ|1|D|U|438
6XIJ|1|D|U|439
6XIJ|1|D|C|440
6XIJ|1|D|A|441
6XIJ|1|D|G|442
*
6XIJ|1|D|C|492
6XIJ|1|D|A|493
6XIJ|1|D|G|494
6XIJ|1|D|A|495
6XIJ|1|D|A|496
6XIJ|1|D|G|497
6XIJ|1|D|A|498
6XIJ|1|D|A|499
6XIJ|1|D|G|500
*
6XIJ|1|D|C|545
6XIJ|1|D|A|546
6XIJ|1|D|A|547
6XIJ|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12