J5_6XQD_014

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

6XQD|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|2A|C|601
6XQD|1|2A|G|602
6XQD|1|2A|A|603
6XQD|1|2A|G|604
*
6XQD|1|2A|C|624
6XQD|1|2A|G|625
6XQD|1|2A|U|626
6XQD|1|2A|A|627
6XQD|1|2A|G|628
*
6XQD|1|2A|C|635
6XQD|1|2A|G|636
6XQD|1|2A|A|637
6XQD|1|2A|G|638
*
6XQD|1|2A|C|650
6XQD|1|2A|G|651
6XQD|1|2A|C|652
6XQD|1|2A|A|652|||A
6XQD|1|2A|A|652|||B
6XQD|1|2A|G|652|||C
*
6XQD|1|2A|C|652|||V
6XQD|1|2A|A|653
6XQD|1|2A|A|654
6XQD|1|2A|A|655
6XQD|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15