J5_6XQE_006

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

6XQE|1|1A|A|2062, 6XQE|1|1A|A|2448, 6XQE|1|1A|U|2609

QA status

Modified nucleotides: 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQE|1|1A|A|2057
6XQE|1|1A|A|2058
6XQE|1|1A|A|2059
6XQE|1|1A|A|2060
6XQE|1|1A|G|2061
6XQE|1|1A|A|2062
6XQE|1|1A|C|2063
6XQE|1|1A|C|2064
*
6XQE|1|1A|G|2446
6XQE|1|1A|G|2447
6XQE|1|1A|A|2448
6XQE|1|1A|U|2449
6XQE|1|1A|A|2450
6XQE|1|1A|A|2451
6XQE|1|1A|C|2452
6XQE|1|1A|A|2453
*
6XQE|1|1A|U|2500
6XQE|1|1A|C|2501
6XQE|1|1A|G|2502
6XQE|1|1A|2MA|2503
6XQE|1|1A|U|2504
6XQE|1|1A|G|2505
6XQE|1|1A|U|2506
6XQE|1|1A|C|2507
*
6XQE|1|1A|G|2582
6XQE|1|1A|G|2583
6XQE|1|1A|U|2584
6XQE|1|1A|U|2585
6XQE|1|1A|C|2586
6XQE|1|1A|A|2587
6XQE|1|1A|G|2588
*
6XQE|1|1A|C|2606
6XQE|1|1A|G|2607
6XQE|1|1A|G|2608
6XQE|1|1A|U|2609
6XQE|1|1A|C|2610
6XQE|1|1A|U|2611

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 15

50S ribosomal protein L32

Chain 1D

50S ribosomal protein L2

Chain 1E

50S ribosomal protein L3

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15

Chain 1Q

50S ribosomal protein L16

Chain 1W

50S ribosomal protein L22

Chain 1x

Transfer RNA; tRNA