J5_6XQE_014

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

6XQE|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQE|1|2A|C|601
6XQE|1|2A|G|602
6XQE|1|2A|A|603
6XQE|1|2A|G|604
*
6XQE|1|2A|C|624
6XQE|1|2A|G|625
6XQE|1|2A|U|626
6XQE|1|2A|A|627
6XQE|1|2A|G|628
*
6XQE|1|2A|C|635
6XQE|1|2A|G|636
6XQE|1|2A|A|637
6XQE|1|2A|G|638
*
6XQE|1|2A|C|650
6XQE|1|2A|G|651
6XQE|1|2A|C|652
6XQE|1|2A|A|652|||A
6XQE|1|2A|A|652|||B
6XQE|1|2A|G|652|||C
*
6XQE|1|2A|C|652|||V
6XQE|1|2A|A|653
6XQE|1|2A|A|654
6XQE|1|2A|A|655
6XQE|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15