3D structure

PDB id
6XQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAAG*CGGACGGG*CAGG*CCAC*GGCAG
Length
25 nucleotides
Bulged bases
6XQE|1|2a|A|109, 6XQE|1|2a|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XQE|1|2a|C|58
6XQE|1|2a|A|59
6XQE|1|2a|A|60
6XQE|1|2a|G|61
*
6XQE|1|2a|C|106
6XQE|1|2a|G|107
6XQE|1|2a|G|108
6XQE|1|2a|A|109
6XQE|1|2a|C|110
6XQE|1|2a|G|111
6XQE|1|2a|G|112
6XQE|1|2a|G|113
*
6XQE|1|2a|C|314
6XQE|1|2a|A|315
6XQE|1|2a|G|316
6XQE|1|2a|G|317
*
6XQE|1|2a|C|336
6XQE|1|2a|C|337
6XQE|1|2a|A|338
6XQE|1|2a|C|339
*
6XQE|1|2a|G|350
6XQE|1|2a|G|351
6XQE|1|2a|C|352
6XQE|1|2a|A|353
6XQE|1|2a|G|354

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2O
50S ribosomal protein L14
Chain 2p
30S ribosomal protein S16
Chain 2t
30S ribosomal protein S20

Coloring options:

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