J5_6XYW_005
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GUAAGACCC*GGGAUAACA*UCGAUGUC*GGUUUAG*CGGUUC
- Length
- 39 nucleotides
- Bulged bases
- 6XYW|1|1|A|2746, 6XYW|1|1|U|2747, 6XYW|1|1|U|2883, 6XYW|1|1|U|2907, 6XYW|1|1|U|2908
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XYW|1|1|G|2368
6XYW|1|1|U|2369
6XYW|1|1|A|2370
6XYW|1|1|A|2371
6XYW|1|1|G|2372
6XYW|1|1|A|2373
6XYW|1|1|C|2374
6XYW|1|1|C|2375
6XYW|1|1|C|2376
*
6XYW|1|1|G|2743
6XYW|1|1|G|2744
6XYW|1|1|G|2745
6XYW|1|1|A|2746
6XYW|1|1|U|2747
6XYW|1|1|A|2748
6XYW|1|1|A|2749
6XYW|1|1|C|2750
6XYW|1|1|A|2751
*
6XYW|1|1|U|2798
6XYW|1|1|C|2799
6XYW|1|1|G|2800
6XYW|1|1|A|2801
6XYW|1|1|U|2802
6XYW|1|1|G|2803
6XYW|1|1|U|2804
6XYW|1|1|C|2805
*
6XYW|1|1|G|2880
6XYW|1|1|G|2881
6XYW|1|1|U|2882
6XYW|1|1|U|2883
6XYW|1|1|U|2884
6XYW|1|1|A|2885
6XYW|1|1|G|2886
*
6XYW|1|1|C|2904
6XYW|1|1|G|2905
6XYW|1|1|G|2906
6XYW|1|1|U|2907
6XYW|1|1|U|2908
6XYW|1|1|C|2909
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain Ab
- Expressed protein
- Chain Ac
- 50S ribosomal protein L3-2, mitochondrial
- Chain Ad
- 50S ribosomal protein L4
- Chain Al
- Ribosomal protein L18e/L15 superfamily protein
- Chain Am
- 60S ribosomal protein L16, mitochondrial
- Chain As
- AT1G52370 protein
Coloring options: