J5_6XYW_007

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUAG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

6XYW|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XYW_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1683

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6XYW|1|2|C|44
6XYW|1|2|U|45
6XYW|1|2|A|46
6XYW|1|2|G|47
*
6XYW|1|2|C|421
6XYW|1|2|G|422
6XYW|1|2|U|423
6XYW|1|2|G|424
*
6XYW|1|2|C|456
6XYW|1|2|U|457
6XYW|1|2|U|458
6XYW|1|2|U|459
6XYW|1|2|C|460
*
6XYW|1|2|G|494
6XYW|1|2|A|495
6XYW|1|2|A|496
6XYW|1|2|G|497
*
6XYW|1|2|C|542
6XYW|1|2|A|543
6XYW|1|2|A|544
6XYW|1|2|G|545

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bc

Ribosomal protein S4, mitochondrial

Chain Bk

Ribosomal protein S12, mitochondrial