J5_6XYW_009

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6XYW|1|2|A|68, 6XYW|1|2|A|173, 6XYW|1|2|C|371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XYW_009 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.1475

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6XYW|1|2|C|66
6XYW|1|2|A|67
6XYW|1|2|A|68
6XYW|1|2|G|69
*
6XYW|1|2|C|170
6XYW|1|2|G|171
6XYW|1|2|A|172
6XYW|1|2|A|173
6XYW|1|2|C|174
6XYW|1|2|G|175
6XYW|1|2|G|176
6XYW|1|2|G|177
*
6XYW|1|2|C|333
6XYW|1|2|A|334
6XYW|1|2|C|335
*
6XYW|1|2|G|356
6XYW|1|2|A|357
6XYW|1|2|C|358
*
6XYW|1|2|G|369
6XYW|1|2|G|370
6XYW|1|2|C|371
6XYW|1|2|A|372
6XYW|1|2|G|373

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Ak

50S ribosomal protein HLP, mitochondrial

Chain Ap

At1g24240/F3I6_17

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial