J5_6XYW_010
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GGAUUUUAAGAAAAAGAA*UUUUCGC*GUUCGAUCCUUCCCAGUAAA*UCGCUUUUACGCGAGAAA*UAAGC
- Length
- 68 nucleotides
- Bulged bases
- 6XYW|1|1|A|260, 6XYW|1|1|G|267, 6XYW|1|1|A|268, 6XYW|1|1|C|491, 6XYW|1|1|A|493, 6XYW|1|1|C|501, 6XYW|1|1|U|535, 6XYW|1|1|A|538, 6XYW|1|1|G|540, 6XYW|1|1|A|546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XYW|1|1|G|252
6XYW|1|1|G|253
6XYW|1|1|A|254
6XYW|1|1|U|255
6XYW|1|1|U|256
6XYW|1|1|U|257
6XYW|1|1|U|258
6XYW|1|1|A|259
6XYW|1|1|A|260
6XYW|1|1|G|261
6XYW|1|1|A|262
6XYW|1|1|A|263
6XYW|1|1|A|264
6XYW|1|1|A|265
6XYW|1|1|A|266
6XYW|1|1|G|267
6XYW|1|1|A|268
6XYW|1|1|A|269
*
6XYW|1|1|U|302
6XYW|1|1|U|303
6XYW|1|1|U|304
6XYW|1|1|U|305
6XYW|1|1|C|306
6XYW|1|1|G|307
6XYW|1|1|C|308
*
6XYW|1|1|G|488
6XYW|1|1|U|489
6XYW|1|1|U|490
6XYW|1|1|C|491
6XYW|1|1|G|492
6XYW|1|1|A|493
6XYW|1|1|U|494
6XYW|1|1|C|495
6XYW|1|1|C|496
6XYW|1|1|U|497
6XYW|1|1|U|498
6XYW|1|1|C|499
6XYW|1|1|C|500
6XYW|1|1|C|501
6XYW|1|1|A|502
6XYW|1|1|G|503
6XYW|1|1|U|504
6XYW|1|1|A|505
6XYW|1|1|A|506
6XYW|1|1|A|507
*
6XYW|1|1|U|530
6XYW|1|1|C|531
6XYW|1|1|G|532
6XYW|1|1|C|533
6XYW|1|1|U|534
6XYW|1|1|U|535
6XYW|1|1|U|536
6XYW|1|1|U|537
6XYW|1|1|A|538
6XYW|1|1|C|539
6XYW|1|1|G|540
6XYW|1|1|C|541
6XYW|1|1|G|542
6XYW|1|1|A|543
6XYW|1|1|G|544
6XYW|1|1|A|545
6XYW|1|1|A|546
6XYW|1|1|A|547
*
6XYW|1|1|U|562
6XYW|1|1|A|563
6XYW|1|1|A|564
6XYW|1|1|G|565
6XYW|1|1|C|566
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AK
- At4g22000
- Chain AP
- rPPR*
- Chain Ag
- Ribosomal protein L9/RNase H1
- Chain Ax
- AT4g31460/F3L17_30
Coloring options: