J5_6XYW_013

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUUC

Length

37 nucleotides

Bulged bases

6XYW|1|1|A|2746, 6XYW|1|1|U|2747, 6XYW|1|1|U|2883, 6XYW|1|1|U|2907, 6XYW|1|1|U|2908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|1|G|2368
6XYW|1|1|U|2369
6XYW|1|1|A|2370
6XYW|1|1|A|2371
6XYW|1|1|G|2372
6XYW|1|1|A|2373
6XYW|1|1|C|2374
6XYW|1|1|C|2375
*
6XYW|1|1|G|2744
6XYW|1|1|G|2745
6XYW|1|1|A|2746
6XYW|1|1|U|2747
6XYW|1|1|A|2748
6XYW|1|1|A|2749
6XYW|1|1|C|2750
6XYW|1|1|A|2751
*
6XYW|1|1|U|2798
6XYW|1|1|C|2799
6XYW|1|1|G|2800
6XYW|1|1|A|2801
6XYW|1|1|U|2802
6XYW|1|1|G|2803
6XYW|1|1|U|2804
6XYW|1|1|C|2805
*
6XYW|1|1|G|2880
6XYW|1|1|G|2881
6XYW|1|1|U|2882
6XYW|1|1|U|2883
6XYW|1|1|U|2884
6XYW|1|1|A|2885
6XYW|1|1|G|2886
*
6XYW|1|1|C|2904
6XYW|1|1|G|2905
6XYW|1|1|G|2906
6XYW|1|1|U|2907
6XYW|1|1|U|2908
6XYW|1|1|C|2909

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ab

Expressed protein

Chain Ac

50S ribosomal protein L3-2, mitochondrial

Chain Ad

50S ribosomal protein L4

Chain Al

Ribosomal protein L18e/L15 superfamily protein

Chain Am

60S ribosomal protein L16, mitochondrial

Chain As

AT1G52370 protein