J5_6XZ7_001
3D structure
- PDB id
- 6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 6XZ7|1|A|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XZ7_001 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0579
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6XZ7|1|A|C|47
6XZ7|1|A|G|48
6XZ7|1|A|A|49
6XZ7|1|A|U|50
6XZ7|1|A|G|51
6XZ7|1|A|A|52
6XZ7|1|A|A|53
6XZ7|1|A|G|54
*
6XZ7|1|A|C|116
6XZ7|1|A|G|117
6XZ7|1|A|A|118
6XZ7|1|A|A|119
6XZ7|1|A|U|120
6XZ7|1|A|G|121
*
6XZ7|1|A|C|130
6XZ7|1|A|A|131
*
6XZ7|1|A|U|148
6XZ7|1|A|A|149
6XZ7|1|A|U|150
*
6XZ7|1|A|A|176
6XZ7|1|A|G|177
6XZ7|1|A|G|178
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L34
Coloring options: