3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
6XZB|1|A1|A|109, 6XZB|1|A1|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6XZB_003 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.074
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6XZB|1|A1|C|58
6XZB|1|A1|A|59
6XZB|1|A1|A|60
6XZB|1|A1|G|61
*
6XZB|1|A1|C|106
6XZB|1|A1|G|107
6XZB|1|A1|G|108
6XZB|1|A1|A|109
6XZB|1|A1|C|110
6XZB|1|A1|G|111
6XZB|1|A1|G|112
6XZB|1|A1|G|113
*
6XZB|1|A1|C|314
6XZB|1|A1|A|315
6XZB|1|A1|C|316
*
6XZB|1|A1|G|337
6XZB|1|A1|A|338
6XZB|1|A1|C|339
*
6XZB|1|A1|G|350
6XZB|1|A1|G|351
6XZB|1|A1|C|352
6XZB|1|A1|A|353
6XZB|1|A1|G|354

Current chains

Chain A1
16S rRNA

Nearby chains

Chain K2
50S ribosomal protein L14
Chain P1
30S ribosomal protein S16
Chain P2
50S ribosomal protein L19
Chain T1
30S ribosomal protein S20

Coloring options:


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